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IDENTIFIERS
Sample ID: |
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TAXONOMY
Phylum | Arthropoda | Subfamily | Scolytinae |
Class | Insecta | Genus | Dendroctonus |
Order | Coleoptera | Species | Dendroctonus valens |
Family | Curculionidae | Subspecies |
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SPECIMEN DETAILS
Life Stage | Brief Note | ||
Sex | |||
Tissue | |||
Voucher Status |
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COLLECTION DETAILS
Country | Date Collected: | ||
Province/State | Collectors | ||
Region/County | Elevation | ||
Sector | Elv. Accuracy | ||
Exact Site | Brief Note | ||
Latitude | |||
Longitude | |||
Coord Source | |||
Coord Accuracy |
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SEQUENCE: | COI | ||
Sequence ID | GenBank Accession | OL689184 | |
Last Updated | Genome | Mitochondrial genome | |
Locus | |||
Nucleotides | 1540 bp | ||
ATTTTACCGAATAAATGATTATATTCTACAAATCATAAAGATATTGGTACTCTATATTTTATCTTTGGAGCTTGGTCAGGGAT AGTAGGAACTTCATTAAGATTAATTATTCGAACAGAATTAGGGACCCCAGGAAGGTTAATCGGAGATGACCAAATTTATAA CACTATTGTGACTGCACATGCTTTTATCATAATTTTTTTTATAGTTATACCTATTATAATTGGGGGATTTGGTAATTGATTAGT CCCATTAATATTAGGGGCCCCAGATATAGCTTTCCCTCGATTAAACAATATAAGATTCTGACTCCTACCCCCTTCTTTAACAT TTTTATTATTAAGAAGAATCATTGATAAAGGAGCTGGTACTGGGTGAACAGTATACCCCCCTTTAGCCTCCAATCTATCTCAC GAAGGATCCTCTGTAGACTGTGCGATTTTCAGTCTTCATATGGCGGGTATCTCATCTATCCTAGGAGCTATTAATTTTATCTCT ACAATTATAAATATAAACCCTTCAGGAATAAAGCTAGACCGATTAACCCTATTTACTTGAGCAGTAAAAATCACAGCTATTCT ATTATTGCTATCTTTACCAGTATTAGCAGGGGCTATTACTATATTATTAACAGACCGAAATATCAACACTACTTTCTTTGACCC TTCAGGGGGAGGAGACCCCATTTTATATCAGCACTTATTTTGATTTTTTGGCCACCCAGAAGTATACATTTTAATCCTACCAG GATTTGGGATAATTTCTCATATTATCAGACAAGAAAGAGGTAAAAAGGAAGCTTTTGGATTACTGGGTATAATCTATGCTATA ATAGCAATTGGCCTATTAGGATTTGTAGTATGAGCTCATCACATATTTACAGTAGGAATAGATGTGGACACCCGAGCCTATTT TACATCTGCTACAATAATTATCGCAGTTCCTACGGGAATTAAAATTTTTAGATGGCTCGCCACATACCATGGGTCCCAAATCA GGCTAACTCCTTCCTCTCTATGAGCTATTGGATTCATTTTTCTTTTTACTATAGGAGGTTTAACAGGTGTAATTTTAGCAAACTC ATCAATTGATATTATTTTACATGATACCTATTATGTAGTAGCTCATTTTCATTATGTACTCTCTATAGGAGCAGTCTTCGCTATCC TGGGGGGAGTAATCCAATGATTTCCTCTCTTTACAGGACTAACTTTAAACAATAAGTACTTAAAAATTCAATTTCTATCAATATT TATTGGAGTAAATTTAACCTTCTTCCCTCAACACTTTTTAGGGCTAAGAGGTATGCCCCGCCGTTATTCAGATTACCCTGATGCC TACTACCTATGAAATATAATTTCTTCAATTGGAAGAATAATCTCTATAATTAGAATTATTTACTTTATTTTTATCCTATGGGAAGC TTTCACATCTAAACGATTAAATTTAACTTCTCTAAATACCCCAACATCTATCGAATGATTCCAATATTTTCCCCCAGCAGAACAT AGTTATGATGAACTTCCTATAGTAACTAATT | |||
Amino Acids | |||
MLPNKWLYSTNHKDIGTLYFIFGAWSGMVGTSLSLIIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLV PLMLGAPDMAFPRLNNMSFWLLPPSLTFLLLSSIIDKGAGTGWTVYPPLASNLSHEGSSVDCAIFSLHMAGISSILGAINFISTI MNMNPSGMKLDRLTLFTWAVKITAILLLLSLPVLAGAITMLLTDRNINTTFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFG MISHIISQESGKKEAFGLLGMIYAMMAIGLLGFVVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATYHGSQISLT PSSLWAIGFIFLFTMGGLTGVILANSSIDIILHDTYYVVAHFHYVLSMGAVFAILGGVIQWFPLFTGLTLNNKYLKIQFLSMFIGV NLTFFPQHFLGLSGMPRRYSDYPDAYYLWNMISSIGSMISMISIIYFIFILWEAFTSKRLNLTSLNTPTSIEWFQYFPPAEHSYDE LPMVTN | |||
Illustrative Barcode | |||
Length | Pcr Primers | Read(5’-3’) | Status | Reference |
DVF7/ DVR6 | Forward primer： GGGGTGCTTCTAGTTACCTTATAAC Reverse primer：GGCTGGCAGGATTGTTCAAACTATTTCA | high qual | 【1】 | |
1540 bp | F2441/ R3014 | Forward primer：CCTACAGGAATTAAAATTTTTAGTTGATTAGC Reverse primer：TCCATTGCACTAATCTGCCATATTA | high qual | 【1】【2】 |
REFERENCE
[1] Zhang SN, Shi FM, Xu YB, Tao JX, Zong S. 2022. Characterization of the complete mitochondrial genome of Dendroctonus valens and elimination of nuclear mitochondrial pseudogene interference. J Appl Entomol. 146(7):801–812 [2] Simons, K. T., Ruczinski, I., Kooperberg, C., Fox, B. A., Bystroff, C., & Baker, D. (1999). Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins, 34, 82– 95. https://doi.org/10.1002 |
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